COG1104


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1104, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Cysteine desulfurase/Cysteine sulfinate desulfinase IscS or related enzyme, NifS family
Function(s) descr. Amino acid transport and metabolism (E)

Occurence in the database

COG1104 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_526 FBDBKF_01135 210746 211960 -1 iscS IscS subfamily cysteine desulfurase Morganella morganii S1
1 group_526 EHELCC_00410 96908 98122 1 iscS IscS subfamily cysteine desulfurase Morganella morganii S2
2 group_526 NLDBIP_03050 582014 583228 -1 iscS IscS subfamily cysteine desulfurase Morganella morganii S4
3 group_526 LHKJJB_04565 189255 190469 -1 iscS IscS subfamily cysteine desulfurase Morganella morganii S3
4 group_526 HKOGLL_02480 97113 98327 1 iscS IscS subfamily cysteine desulfurase Morganella morganii S5
5 group_526 F4V73_RS07205 1498764 1499978 -1 IscS subfamily cysteine desulfurase Morganella psychrotolerans
6 group_526 PMI_RS09180 2000841 2002055 -1 IscS subfamily cysteine desulfurase Proteus mirabilis HI4320