COG1087


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1087, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description UDP-glucose 4-epimerase
Function(s) descr. Cell wall/membrane/envelope biogenesis (M)

Occurence in the database

COG1087 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1658 FBDBKF_11055 34465 35481 1 galE UDP-glucose 4-epimerase GalE Morganella morganii S1
1 group_1658 EHELCC_05170 23987 25003 -1 galE UDP-glucose 4-epimerase GalE Morganella morganii S2
2 group_1658 NLDBIP_05490 65052 66068 -1 galE UDP-glucose 4-epimerase GalE Morganella morganii S4
3 group_1658 LHKJJB_02370 42576 43592 -1 galE UDP-glucose 4-epimerase GalE Morganella morganii S3
4 group_1658 HKOGLL_15750 66016 67032 -1 galE UDP-glucose 4-epimerase GalE Morganella morganii S5
5 group_1658 F4V73_RS08190 1704103 1705119 -1 galE UDP-glucose 4-epimerase GalE Morganella psychrotolerans
6 group_1658 PMI_RS09615 2100501 2101517 -1 galE UDP-glucose 4-epimerase GalE Proteus mirabilis HI4320