COG1022


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1022, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Long-chain acyl-CoA synthetase (AMP-forming)
Function(s) descr. Lipid transport and metabolism (I)

Occurence in the database

COG1022 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_867 FBDBKF_04400 70824 72632 -1 fAA1 Long-chain acyl-CoA synthetase (AMP-forming) Morganella morganii S1
1 group_867 EHELCC_05690 130281 132089 -1 fAA1 Long-chain acyl-CoA synthetase (AMP-forming) Morganella morganii S2
2 group_867 NLDBIP_06010 171346 173154 -1 fAA1 Long-chain acyl-CoA synthetase (AMP-forming) Morganella morganii S4
3 group_867 LHKJJB_02890 148870 150678 -1 fAA1 Long-chain acyl-CoA synthetase (AMP-forming) Morganella morganii S3
4 group_867 HKOGLL_06365 70734 72542 -1 fAA1 Long-chain acyl-CoA synthetase (AMP-forming) Morganella morganii S5
5 group_867 F4V73_RS08845 1831951 1833759 -1 long-chain fatty acid--CoA ligase Morganella psychrotolerans
6 group_867 PMI_RS10255 2246231 2248039 -1 long-chain fatty acid--CoA ligase Proteus mirabilis HI4320