COG1003


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1003, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain
Function(s) descr. Amino acid transport and metabolism (E)

Occurence in the database

COG1003 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_823 FBDBKF_04130 10204 13080 -1 gcvP aminomethyl-transferring glycine dehydrogenase Morganella morganii S1
1 group_823 EHELCC_05420 69661 72537 -1 gcvP aminomethyl-transferring glycine dehydrogenase Morganella morganii S2
2 group_823 NLDBIP_05740 110726 113602 -1 gcvP aminomethyl-transferring glycine dehydrogenase Morganella morganii S4
3 group_823 LHKJJB_02620 88250 91126 -1 gcvP aminomethyl-transferring glycine dehydrogenase Morganella morganii S3
4 group_823 HKOGLL_06095 10114 12990 -1 gcvP aminomethyl-transferring glycine dehydrogenase Morganella morganii S5
5 group_823 F4V73_RS08575 1769562 1772438 -1 gcvP aminomethyl-transferring glycine dehydrogenase Morganella psychrotolerans
6 group_823 PMI_RS09955 2157060 2159936 -1 gcvP aminomethyl-transferring glycine dehydrogenase Proteus mirabilis HI4320