COG0841


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0841, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 30 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Multidrug efflux pump subunit AcrB
Function(s) descr. Defense mechanisms (V)

Occurence in the database

COG0841 is associated with 30 different proteins (see tab "Protein list" and "Profile")
The 30 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_682 FBDBKF_02605 217488 220574 1 acrB Multidrug efflux pump subunit AcrB Morganella morganii S1
1 group_128 FBDBKF_15965 43537 46713 -1 acrB Multidrug efflux pump subunit AcrB Morganella morganii S1
2 group_56 FBDBKF_16480 19454 22546 -1 mdtC multidrug efflux RND transporter permease subunit MdtC Morganella morganii S1
3 group_56 FBDBKF_16485 22543 25683 -1 acrB MdtB/MuxB family multidrug efflux RND transporter permease subunit Morganella morganii S1
4 group_682 EHELCC_03075 605308 608394 1 acrB Multidrug efflux pump subunit AcrB Morganella morganii S2
5 group_56 EHELCC_08345 136440 139532 -1 mdtC multidrug efflux RND transporter permease subunit MdtC Morganella morganii S2
6 group_56 EHELCC_08350 139529 142669 -1 acrB MdtB/MuxB family multidrug efflux RND transporter permease subunit Morganella morganii S2
7 group_128 EHELCC_18570 971 4147 -1 acrB Multidrug efflux pump subunit AcrB Morganella morganii S2
8 group_682 NLDBIP_00385 71742 74828 -1 acrB Multidrug efflux pump subunit AcrB Morganella morganii S4
9 group_56 NLDBIP_08670 136440 139532 -1 mdtC multidrug efflux RND transporter permease subunit MdtC Morganella morganii S4
10 group_56 NLDBIP_08675 139529 142669 -1 acrB MdtB/MuxB family multidrug efflux RND transporter permease subunit Morganella morganii S4
11 group_128 NLDBIP_17400 30976 34152 -1 acrB Multidrug efflux pump subunit AcrB Morganella morganii S4
12 group_682 LHKJJB_01650 317857 320943 1 acrB Multidrug efflux pump subunit AcrB Morganella morganii S3
13 group_56 LHKJJB_05590 114490 117630 1 acrB MdtB/MuxB family multidrug efflux RND transporter permease subunit Morganella morganii S3
14 group_56 LHKJJB_05595 117627 120719 1 mdtC multidrug efflux RND transporter permease subunit MdtC Morganella morganii S3
15 group_128 LHKJJB_17260 22036 25212 1 acrB Multidrug efflux pump subunit AcrB Morganella morganii S3
16 group_682 HKOGLL_01690 323368 326454 1 acrB Multidrug efflux pump subunit AcrB Morganella morganii S5
17 group_56 HKOGLL_05320 121031 124123 -1 mdtC multidrug efflux RND transporter permease subunit MdtC Morganella morganii S5
18 group_56 HKOGLL_05325 124120 127260 -1 acrB MdtB/MuxB family multidrug efflux RND transporter permease subunit Morganella morganii S5
19 group_128 HKOGLL_17135 30976 34152 -1 acrB Multidrug efflux pump subunit AcrB Morganella morganii S5
20 group_56 F4V73_RS02995 635375 638467 -1 mdtC multidrug efflux RND transporter permease subunit MdtC Morganella psychrotolerans
21 group_56 F4V73_RS03000 638464 641577 -1 MdtB/MuxB family multidrug efflux RND transporter permease subunit Morganella psychrotolerans
22 group_682 F4V73_RS05045 1072692 1075778 1 efflux RND transporter permease subunit Morganella psychrotolerans
23 group_128 F4V73_RS16345 83639 86815 1 efflux RND transporter permease subunit Morganella psychrotolerans
24 group_128 F4V73_RS17010 24624 27773 -1 efflux RND transporter permease subunit Morganella psychrotolerans
25 group_128 PMI_RS00635 161877 165035 -1 efflux RND transporter permease subunit Proteus mirabilis HI4320
26 group_56 PMI_RS07735 1689478 1692609 1 MdtB/MuxB family multidrug efflux RND transporter permease subunit Proteus mirabilis HI4320
27 group_56 PMI_RS07740 1692606 1695689 1 mdtC multidrug efflux RND transporter permease subunit MdtC Proteus mirabilis HI4320
28 group_128 PMI_RS13345 2956999 2960076 1 MexW/MexI family multidrug efflux RND transporter permease subunit Proteus mirabilis HI4320
29 group_128 PMI_RS17910 3934196 3937330 1 efflux RND transporter permease subunit Proteus mirabilis HI4320