COG0835


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0835, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Chemotaxis signal transduction protein CheW
Function(s) descr. Signal transduction mechanisms (T)

Occurence in the database

COG0835 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_483 FBDBKF_00790 144898 145395 -1 cheW chemotaxis protein CheW Morganella morganii S1
1 group_483 EHELCC_00755 163473 163970 1 cheW chemotaxis protein CheW Morganella morganii S2
2 group_483 NLDBIP_02705 516166 516663 -1 cheW chemotaxis protein CheW Morganella morganii S4
3 group_483 LHKJJB_04220 123407 123904 -1 cheW chemotaxis protein CheW Morganella morganii S3
4 group_483 HKOGLL_02825 163678 164175 1 cheW chemotaxis protein CheW Morganella morganii S5
5 group_483 F4V73_RS06790 1409824 1410321 -1 cheW chemotaxis protein CheW Morganella psychrotolerans
6 group_483 PMI_RS08140 1779361 1779861 -1 cheW chemotaxis protein CheW Proteus mirabilis HI4320