COG0806


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0806, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Ribosomal 30S subunit maturation factor RimM, required for 16S rRNA processing
Function(s) descr. Translation, ribosomal structure and biogenesis (J)

Occurence in the database

COG0806 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2042 FBDBKF_15310 70553 71101 1 rimM ribosome maturation factor RimM Morganella morganii S1
1 group_2042 EHELCC_10935 13805 14353 -1 rimM ribosome maturation factor RimM Morganella morganii S2
2 group_2042 NLDBIP_11280 13805 14353 -1 rimM ribosome maturation factor RimM Morganella morganii S4
3 group_2042 LHKJJB_11140 13805 14353 -1 rimM ribosome maturation factor RimM Morganella morganii S3
4 group_2042 HKOGLL_09750 13805 14353 -1 rimM ribosome maturation factor RimM Morganella morganii S5
5 group_2042 F4V73_RS12140 13058 13606 -1 rimM ribosome maturation factor RimM Morganella psychrotolerans
6 group_2042 PMI_RS01865 438284 438829 1 rimM ribosome maturation factor RimM Proteus mirabilis HI4320