COG0771


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0771, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description UDP-N-acetylmuramoylalanine-D-glutamate ligase
Function(s) descr. Cell wall/membrane/envelope biogenesis (M)

Occurence in the database

COG0771 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_859 FBDBKF_04345 57810 59126 -1 murD UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase Morganella morganii S1
1 group_859 EHELCC_05635 117267 118583 -1 murD UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase Morganella morganii S2
2 group_859 NLDBIP_05955 158332 159648 -1 murD UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase Morganella morganii S4
3 group_859 LHKJJB_02835 135856 137172 -1 murD UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase Morganella morganii S3
4 group_859 HKOGLL_06310 57720 59036 -1 murD UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase Morganella morganii S5
5 group_859 F4V73_RS08790 1818930 1820246 -1 murD UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase Morganella psychrotolerans
6 group_859 PMI_RS10210 2235538 2236848 -1 murD UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase Proteus mirabilis HI4320