COG0729


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0729, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Outer membrane translocation and assembly module TamA
Function(s) descr. Cell wall/membrane/envelope biogenesis (M)

Occurence in the database

COG0729 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1382 FBDBKF_08540 87927 89669 1 tamA Outer membrane translocation and assembly module TamA Morganella morganii S1
1 group_1382 EHELCC_12985 74056 75798 -1 tamA Outer membrane translocation and assembly module TamA Morganella morganii S2
2 group_1382 NLDBIP_13325 74056 75798 -1 tamA Outer membrane translocation and assembly module TamA Morganella morganii S4
3 group_1382 LHKJJB_13230 86645 88387 1 tamA Outer membrane translocation and assembly module TamA Morganella morganii S3
4 group_1382 HKOGLL_11800 74056 75798 -1 tamA Outer membrane translocation and assembly module TamA Morganella morganii S5
5 group_1382 F4V73_RS09765 54385 56127 1 autotransporter assembly complex family protein Morganella psychrotolerans
6 group_1382 PMI_RS16875 3714997 3716739 1 autotransporter assembly complex family protein Proteus mirabilis HI4320