COG0718


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0718, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description DNA-binding nucleoid-associated protein YbaB/EfbC
Function(s) descr. Transcription (K)

Occurence in the database

COG0718 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2132 FBDBKF_16010 56080 56409 1 ybaB YbaB/EbfC family nucleoid-associated protein Morganella morganii S1
1 group_2132 EHELCC_18615 13514 13843 1 ybaB YbaB/EbfC family nucleoid-associated protein Morganella morganii S2
2 group_2132 NLDBIP_17445 43519 43848 1 ybaB YbaB/EbfC family nucleoid-associated protein Morganella morganii S4
3 group_2132 LHKJJB_17215 12340 12669 -1 ybaB YbaB/EbfC family nucleoid-associated protein Morganella morganii S3
4 group_2132 HKOGLL_17180 43519 43848 1 ybaB YbaB/EbfC family nucleoid-associated protein Morganella morganii S5
5 group_2132 F4V73_RS16300 73823 74152 -1 YbaB/EbfC family nucleoid-associated protein Morganella psychrotolerans
6 group_2132 PMI_RS00675 174615 174944 1 YbaB/EbfC family nucleoid-associated protein Proteus mirabilis HI4320