COG0679


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0679, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 9 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Predicted permease, AEC (auxin efflux carrier) family
Function(s) descr. General function prediction only (R)

Occurence in the database

COG0679 is associated with 9 different proteins (see tab "Protein list" and "Profile")
The 9 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_674 FBDBKF_02440 182653 183558 1 yfdV putative permease, AEC (auxin efflux carrier) family Morganella morganii S1
1 group_674 EHELCC_02910 570473 571378 1 yfdV putative permease, AEC (auxin efflux carrier) family Morganella morganii S2
2 group_674 NLDBIP_00550 108758 109663 -1 yfdV putative permease, AEC (auxin efflux carrier) family Morganella morganii S4
3 group_674 LHKJJB_01485 283022 283927 1 yfdV putative permease, AEC (auxin efflux carrier) family Morganella morganii S3
4 group_674 HKOGLL_01525 288533 289438 1 yfdV putative permease, AEC (auxin efflux carrier) family Morganella morganii S5
5 group_3803 F4V73_RS00750 157303 158250 -1 AEC family transporter Morganella psychrotolerans
6 group_674 F4V73_RS04820 1024318 1025223 1 AEC family transporter Morganella psychrotolerans
7 group_674 PMI_RS05875 1286640 1287548 1 AEC family transporter Proteus mirabilis HI4320
8 group_3803 PMI_RS09520 2076748 2077671 -1 AEC family transporter Proteus mirabilis HI4320