COG0541


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0541, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Signal recognition particle GTPase
Function(s) descr. Intracellular trafficking, secretion, and vesicular transport (U)

Occurence in the database

COG0541 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2040 FBDBKF_15300 68786 70147 1 ffh signal recognition particle protein Morganella morganii S1
1 group_2040 EHELCC_10945 14759 16120 -1 ffh signal recognition particle protein Morganella morganii S2
2 group_2040 NLDBIP_11290 14759 16120 -1 ffh signal recognition particle protein Morganella morganii S4
3 group_2040 LHKJJB_11150 14759 16120 -1 ffh signal recognition particle protein Morganella morganii S3
4 group_2040 HKOGLL_09760 14759 16120 -1 ffh signal recognition particle protein Morganella morganii S5
5 group_2040 F4V73_RS12150 14011 15372 -1 ffh signal recognition particle protein Morganella psychrotolerans
6 group_2040 PMI_RS01855 436518 437879 1 ffh signal recognition particle protein Proteus mirabilis HI4320