COG0533


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0533, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description tRNA A37 threonylcarbamoyltransferase TsaD
Function(s) descr. Translation, ribosomal structure and biogenesis (J)

Occurence in the database

COG0533 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2279 FBDBKF_17515 36701 37720 -1 tsaD tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD Morganella morganii S1
1 group_2279 EHELCC_17410 36701 37720 -1 tsaD tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD Morganella morganii S2
2 group_2279 NLDBIP_17785 5076 6095 1 tsaD tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD Morganella morganii S4
3 group_2279 LHKJJB_17705 5074 6093 1 tsaD tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD Morganella morganii S3
4 group_2279 HKOGLL_17715 5074 6093 1 tsaD tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD Morganella morganii S5
5 group_2279 F4V73_RS16690 160577 161596 -1 tsaD tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD Morganella psychrotolerans
6 group_2279 PMI_RS11715 2588230 2589252 -1 tsaD tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD Proteus mirabilis HI4320