COG0486


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0486, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description tRNA U34 5-carboxymethylaminomethyl modifying GTPase MnmE/TrmE
Function(s) descr. Translation, ribosomal structure and biogenesis (J)

Occurence in the database

COG0486 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2087 FBDBKF_15605 51682 53067 1 mnmE tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE Morganella morganii S1
1 group_2087 EHELCC_15965 50982 52367 1 mnmE tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE Morganella morganii S2
2 group_2087 NLDBIP_16405 28296 29681 -1 mnmE tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE Morganella morganii S4
3 group_2087 LHKJJB_16400 50982 52367 1 mnmE tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE Morganella morganii S3
4 group_2087 HKOGLL_16170 50982 52367 1 mnmE tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE Morganella morganii S5
5 group_2087 F4V73_RS17550 144940 146304 -1 mnmE tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE Morganella psychrotolerans
6 group_2087 PMI_RS15480 3441208 3442572 -1 mnmE tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE Proteus mirabilis HI4320