COG0404


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0404, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 8 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Glycine cleavage system protein T (aminomethyltransferase)
Function(s) descr. Amino acid transport and metabolism (E)

Occurence in the database

COG0404 is associated with 8 different proteins (see tab "Protein list" and "Profile")
The 8 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_257 FBDBKF_04140 13616 14710 -1 gcvT glycine cleavage system aminomethyltransferase GcvT Morganella morganii S1
1 group_257 EHELCC_05430 73073 74167 -1 gcvT glycine cleavage system aminomethyltransferase GcvT Morganella morganii S2
2 group_257 NLDBIP_05750 114138 115232 -1 gcvT glycine cleavage system aminomethyltransferase GcvT Morganella morganii S4
3 group_257 LHKJJB_02630 91662 92756 -1 gcvT glycine cleavage system aminomethyltransferase GcvT Morganella morganii S3
4 group_257 HKOGLL_06105 13526 14620 -1 gcvT glycine cleavage system aminomethyltransferase GcvT Morganella morganii S5
5 group_257 F4V73_RS08585 1772945 1774039 -1 gcvT glycine cleavage system aminomethyltransferase GcvT Morganella psychrotolerans
6 group_257 PMI_RS09965 2160470 2161564 -1 gcvT glycine cleavage system aminomethyltransferase GcvT Proteus mirabilis HI4320
7 group_257 PMI_RS14380 3191013 3192161 -1 aminomethyltransferase family protein Proteus mirabilis HI4320