COG0388


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0388, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 13 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Omega-amidase YafV/Nit2, hydrolyzes alpha-ketoglutaramate
Function(s) descr. Energy production and conversion (C)

Occurence in the database

COG0388 is associated with 13 different proteins (see tab "Protein list" and "Profile")
The 13 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_746 FBDBKF_03320 62781 63638 -1 nit1 deaminated glutathione amidase Morganella morganii S1
1 group_3048 FBDBKF_18210 8092 9108 1 nit2 Omega-amidase YafV/Nit2, hydrolyzes alpha-ketoglutaramate Morganella morganii S1
2 group_746 EHELCC_07215 183465 184322 1 nit1 deaminated glutathione amidase Morganella morganii S2
3 group_3048 EHELCC_18245 7965 8981 1 nit2 Omega-amidase YafV/Nit2, hydrolyzes alpha-ketoglutaramate Morganella morganii S2
4 group_746 NLDBIP_07540 183338 184195 1 nit1 deaminated glutathione amidase Morganella morganii S4
5 group_3048 NLDBIP_18170 8166 9182 1 nit2 Omega-amidase YafV/Nit2, hydrolyzes alpha-ketoglutaramate Morganella morganii S4
6 group_746 LHKJJB_07075 147084 147941 1 nit1 deaminated glutathione amidase Morganella morganii S3
7 group_3048 LHKJJB_18365 8004 9020 1 nit2 Omega-amidase YafV/Nit2, hydrolyzes alpha-ketoglutaramate Morganella morganii S3
8 group_746 HKOGLL_03855 85446 86303 -1 nit1 deaminated glutathione amidase Morganella morganii S5
9 group_3048 HKOGLL_18100 7982 8998 1 nit2 Omega-amidase YafV/Nit2, hydrolyzes alpha-ketoglutaramate Morganella morganii S5
10 group_746 F4V73_RS11615 476315 477172 1 nit1 deaminated glutathione amidase Morganella psychrotolerans
11 group_3048 PMI_RS15425 3426782 3427753 1 nitrilase family protein Proteus mirabilis HI4320
12 group_746 PMI_RS18095 3977104 3977964 1 carbon-nitrogen hydrolase family protein Proteus mirabilis HI4320