COG0310


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0310, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 12 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description ABC-type Co2+ transport system, permease component
Function(s) descr. Inorganic ion transport and metabolism (P)

Occurence in the database

COG0310 is associated with 12 different proteins (see tab "Protein list" and "Profile")
The 12 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2853 FBDBKF_10835 134921 135553 -1 cbiM cobalt transporter CbiM Morganella morganii S1
1 group_3081 FBDBKF_18855 16390 17124 -1 cbiM energy-coupling factor ABC transporter permease Morganella morganii S1
2 group_3081 EHELCC_17050 16391 17125 -1 cbiM energy-coupling factor ABC transporter permease Morganella morganii S2
3 group_2853 EHELCC_19420 5707 6339 -1 cbiM cobalt transporter CbiM Morganella morganii S2
4 group_2853 NLDBIP_15000 134911 135543 -1 cbiM cobalt transporter CbiM Morganella morganii S4
5 group_3081 NLDBIP_18430 16390 17124 -1 cbiM energy-coupling factor ABC transporter permease Morganella morganii S4
6 group_3081 LHKJJB_09195 175205 175939 1 cbiM energy-coupling factor ABC transporter permease Morganella morganii S3
7 group_2853 LHKJJB_14345 6183 6815 1 cbiM cobalt transporter CbiM Morganella morganii S3
8 group_3081 HKOGLL_08745 175205 175939 1 cbiM energy-coupling factor ABC transporter permease Morganella morganii S5
9 group_2853 HKOGLL_12965 6183 6815 1 cbiM cobalt transporter CbiM Morganella morganii S5
10 group_3081 F4V73_RS13740 382753 383487 1 energy-coupling factor ABC transporter permease Morganella psychrotolerans
11 group_2853 F4V73_RS16915 6052 6684 1 cbiM cobalt transporter CbiM Morganella psychrotolerans