COG0290


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0290, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Translation initiation factor IF-3
Function(s) descr. Translation, ribosomal structure and biogenesis (J)

Occurence in the database

COG0290 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1810 FBDBKF_13425 61926 62264 -1 infC translation initiation factor IF-3 Morganella morganii S1
1 group_1810 EHELCC_08670 212927 213265 1 infC translation initiation factor IF-3 Morganella morganii S2
2 group_1810 NLDBIP_08995 212927 213265 1 infC translation initiation factor IF-3 Morganella morganii S4
3 group_1810 LHKJJB_05270 43894 44232 -1 infC translation initiation factor IF-3 Morganella morganii S3
4 group_1810 HKOGLL_05645 197518 197856 1 infC translation initiation factor IF-3 Morganella morganii S5
5 group_1810 F4V73_RS03340 713347 713886 1 infC translation initiation factor IF-3 Morganella psychrotolerans
6 group_1810 PMI_RS18910 1100208 1100747 1 infC translation initiation factor IF-3 Proteus mirabilis HI4320