COG0261


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0261, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Ribosomal protein L21
Function(s) descr. Translation, ribosomal structure and biogenesis (J)

Occurence in the database

COG0261 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1391 FBDBKF_08595 101562 101870 1 rplU 50S ribosomal protein L21 Morganella morganii S1
1 group_1391 EHELCC_12930 61855 62163 -1 rplU 50S ribosomal protein L21 Morganella morganii S2
2 group_1391 NLDBIP_13270 61855 62163 -1 rplU 50S ribosomal protein L21 Morganella morganii S4
3 group_1391 LHKJJB_13285 100280 100588 1 rplU 50S ribosomal protein L21 Morganella morganii S3
4 group_1391 HKOGLL_11745 61855 62163 -1 rplU 50S ribosomal protein L21 Morganella morganii S5
5 group_1391 F4V73_RS09820 68145 68453 1 rplU 50S ribosomal protein L21 Morganella psychrotolerans
6 group_1391 PMI_RS16950 3731929 3732237 1 rplU 50S ribosomal protein L21 Proteus mirabilis HI4320