COG0239
Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0239, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries
within the database. 19 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.
Description
Description | Fluoride ion exporter CrcB/FEX, affects chromosome condensation |
---|---|
Function(s) descr. | Cell cycle control, cell division, chromosome partitioning (D) Inorganic ion transport and metabolism (P) |
Occurence in the database
COG0239 is associated with 19 different proteins (see tab "Protein list" and "Profile") |
The 19 proteins are classified into 3 different orthogroup(s) |
# | Orthogroup | Locus | Start | Stop | S. | Gene | Product | Organism |
---|---|---|---|---|---|---|---|---|
0 | group_2473 | FBDBKF_00545 | 92456 | 92854 | -1 | ccrB | Fluoride ion exporter CrcB/FEX, affects chromosome condensation | Morganella morganii S1 |
1 | group_2474 | FBDBKF_00550 | 92865 | 93245 | -1 | crcB | fluoride efflux transporter CrcB | Morganella morganii S1 |
2 | group_1155 | FBDBKF_06615 | 164423 | 164806 | -1 | crcB | fluoride efflux transporter CrcB | Morganella morganii S1 |
3 | group_2474 | EHELCC_00995 | 215623 | 216003 | 1 | crcB | fluoride efflux transporter CrcB | Morganella morganii S2 |
4 | group_2473 | EHELCC_01000 | 216014 | 216412 | 1 | ccrB | Fluoride ion exporter CrcB/FEX, affects chromosome condensation | Morganella morganii S2 |
5 | group_1155 | EHELCC_09660 | 164995 | 165378 | -1 | crcB | fluoride efflux transporter CrcB | Morganella morganii S2 |
6 | group_2473 | NLDBIP_02460 | 463724 | 464122 | -1 | ccrB | Fluoride ion exporter CrcB/FEX, affects chromosome condensation | Morganella morganii S4 |
7 | group_2474 | NLDBIP_02465 | 464133 | 464513 | -1 | crcB | fluoride efflux transporter CrcB | Morganella morganii S4 |
8 | group_1155 | NLDBIP_10040 | 164995 | 165378 | -1 | crcB | fluoride efflux transporter CrcB | Morganella morganii S4 |
9 | group_2473 | LHKJJB_03975 | 70965 | 71363 | -1 | ccrB | Fluoride ion exporter CrcB/FEX, affects chromosome condensation | Morganella morganii S3 |
10 | group_2474 | LHKJJB_03980 | 71374 | 71754 | -1 | crcB | fluoride efflux transporter CrcB | Morganella morganii S3 |
11 | group_1155 | LHKJJB_07715 | 51860 | 52243 | 1 | crcB | fluoride efflux transporter CrcB | Morganella morganii S3 |
12 | group_2474 | HKOGLL_03065 | 215828 | 216208 | 1 | crcB | fluoride efflux transporter CrcB | Morganella morganii S5 |
13 | group_2473 | HKOGLL_03070 | 216219 | 216617 | 1 | ccrB | Fluoride ion exporter CrcB/FEX, affects chromosome condensation | Morganella morganii S5 |
14 | group_1155 | HKOGLL_07265 | 51860 | 52243 | 1 | crcB | fluoride efflux transporter CrcB | Morganella morganii S5 |
15 | group_2473 | F4V73_RS06560 | 1369802 | 1370200 | -1 | CrcB family protein | Morganella psychrotolerans | |
16 | group_2474 | F4V73_RS06565 | 1370211 | 1370591 | -1 | crcB | fluoride efflux transporter CrcB | Morganella psychrotolerans |
17 | group_1155 | F4V73_RS15320 | 49483 | 49866 | 1 | crcB | fluoride efflux transporter CrcB | Morganella psychrotolerans |
18 | group_1155 | PMI_RS02065 | 487014 | 487388 | -1 | crcB | fluoride efflux transporter CrcB | Proteus mirabilis HI4320 |