COG0228


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0228, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Ribosomal protein S16
Function(s) descr. Translation, ribosomal structure and biogenesis (J)

Occurence in the database

COG0228 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2041 FBDBKF_15305 70286 70534 1 rpsP 30S ribosomal protein S16 Morganella morganii S1
1 group_2041 EHELCC_10940 14372 14620 -1 rpsP 30S ribosomal protein S16 Morganella morganii S2
2 group_2041 NLDBIP_11285 14372 14620 -1 rpsP 30S ribosomal protein S16 Morganella morganii S4
3 group_2041 LHKJJB_11145 14372 14620 -1 rpsP 30S ribosomal protein S16 Morganella morganii S3
4 group_2041 HKOGLL_09755 14372 14620 -1 rpsP 30S ribosomal protein S16 Morganella morganii S5
5 group_2041 F4V73_RS12145 13625 13873 -1 rpsP 30S ribosomal protein S16 Morganella psychrotolerans
6 group_2041 PMI_RS01860 438017 438265 1 rpsP 30S ribosomal protein S16 Proteus mirabilis HI4320