COG0223


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0223, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Methionyl-tRNA formyltransferase
Function(s) descr. Translation, ribosomal structure and biogenesis (J)

Occurence in the database

COG0223 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1801 FBDBKF_13370 51037 53022 -1 arnA bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA Morganella morganii S1
1 group_2367 FBDBKF_19085 4714 5658 1 fmt methionyl-tRNA formyltransferase Morganella morganii S1
2 group_1801 EHELCC_08725 222169 224154 1 arnA bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA Morganella morganii S2
3 group_2367 EHELCC_18830 4714 5658 1 fmt methionyl-tRNA formyltransferase Morganella morganii S2
4 group_1801 NLDBIP_09050 222169 224154 1 arnA bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA Morganella morganii S4
5 group_2367 NLDBIP_18845 4714 5658 1 fmt methionyl-tRNA formyltransferase Morganella morganii S4
6 group_1801 LHKJJB_05215 33005 34990 -1 arnA bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA Morganella morganii S3
7 group_2367 LHKJJB_18700 4714 5658 1 fmt methionyl-tRNA formyltransferase Morganella morganii S3
8 group_1801 HKOGLL_05700 206760 208745 1 arnA bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA Morganella morganii S5
9 group_2367 HKOGLL_18435 4714 5658 1 fmt methionyl-tRNA formyltransferase Morganella morganii S5
10 group_1801 F4V73_RS03390 722789 724774 1 arnA bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA Morganella psychrotolerans
11 group_2367 F4V73_RS19080 24734 25678 -1 fmt methionyl-tRNA formyltransferase Morganella psychrotolerans
12 group_1801 PMI_RS05080 1109779 1111761 1 arnA bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA Proteus mirabilis HI4320
13 group_2367 PMI_RS16305 3600377 3601327 -1 fmt methionyl-tRNA formyltransferase Proteus mirabilis HI4320