COG0202


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0202, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description DNA-directed RNA polymerase, alpha subunit/40 kD subunit
Function(s) descr. Transcription (K)

Occurence in the database

COG0202 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2374 FBDBKF_19120 10176 11165 -1 rpoA DNA-directed RNA polymerase subunit alpha Morganella morganii S1
1 group_2374 EHELCC_18865 10176 11165 -1 rpoA DNA-directed RNA polymerase subunit alpha Morganella morganii S2
2 group_2374 NLDBIP_18880 10176 11165 -1 rpoA DNA-directed RNA polymerase subunit alpha Morganella morganii S4
3 group_2374 LHKJJB_18735 10176 11165 -1 rpoA DNA-directed RNA polymerase subunit alpha Morganella morganii S3
4 group_2374 HKOGLL_18470 10176 11165 -1 rpoA DNA-directed RNA polymerase subunit alpha Morganella morganii S5
5 group_2374 F4V73_RS19045 19171 20160 1 rpoA DNA-directed RNA polymerase subunit alpha Morganella psychrotolerans
6 group_2374 PMI_RS16270 3594652 3595641 1 rpoA DNA-directed RNA polymerase subunit alpha Proteus mirabilis HI4320