COG0187


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0187, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description DNA gyrase/topoisomerase IV, subunit B
Function(s) descr. Replication, recombination and repair (L)

Occurence in the database

COG0187 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1107 FBDBKF_06310 95522 97417 -1 parE DNA topoisomerase 4 subunit B Morganella morganii S1
1 group_2080 FBDBKF_15570 42436 44850 -1 gyrB DNA topoisomerase (ATP-hydrolyzing) subunit B Morganella morganii S1
2 group_1107 EHELCC_09355 96094 97989 -1 parE DNA topoisomerase 4 subunit B Morganella morganii S2
3 group_2080 EHELCC_15930 41736 44150 -1 gyrB DNA topoisomerase (ATP-hydrolyzing) subunit B Morganella morganii S2
4 group_1107 NLDBIP_09735 96094 97989 -1 parE DNA topoisomerase 4 subunit B Morganella morganii S4
5 group_2080 NLDBIP_16440 36513 38927 1 gyrB DNA topoisomerase (ATP-hydrolyzing) subunit B Morganella morganii S4
6 group_1107 LHKJJB_08020 119249 121144 1 parE DNA topoisomerase 4 subunit B Morganella morganii S3
7 group_2080 LHKJJB_16365 41736 44150 -1 gyrB DNA topoisomerase (ATP-hydrolyzing) subunit B Morganella morganii S3
8 group_1107 HKOGLL_07570 119249 121144 1 parE DNA topoisomerase 4 subunit B Morganella morganii S5
9 group_2080 HKOGLL_16135 41736 44150 -1 gyrB DNA topoisomerase (ATP-hydrolyzing) subunit B Morganella morganii S5
10 group_1107 F4V73_RS15610 116666 118561 1 parE DNA topoisomerase IV subunit B Morganella psychrotolerans
11 group_2080 F4V73_RS17590 153193 155607 1 gyrB DNA topoisomerase (ATP-hydrolyzing) subunit B Morganella psychrotolerans
12 group_1107 PMI_RS11600 2562862 2564757 -1 parE DNA topoisomerase IV subunit B Proteus mirabilis HI4320
13 group_2080 PMI_RS15515 3449449 3451863 1 gyrB DNA topoisomerase (ATP-hydrolyzing) subunit B Proteus mirabilis HI4320