COG0144


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0144, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description 16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family
Function(s) descr. Translation, ribosomal structure and biogenesis (J)

Occurence in the database

COG0144 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2368 FBDBKF_19090 5740 7032 1 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB Morganella morganii S1
1 group_2368 EHELCC_18835 5740 7032 1 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB Morganella morganii S2
2 group_2368 NLDBIP_18850 5740 7032 1 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB Morganella morganii S4
3 group_2368 LHKJJB_18705 5740 7032 1 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB Morganella morganii S3
4 group_2368 HKOGLL_18440 5740 7032 1 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB Morganella morganii S5
5 group_2368 F4V73_RS19075 23366 24649 -1 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB Morganella psychrotolerans
6 group_2368 PMI_RS16300 3599012 3600280 -1 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB Proteus mirabilis HI4320