COG0125


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0125, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Thymidylate kinase
Function(s) descr. Nucleotide transport and metabolism (F)

Occurence in the database

COG0125 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1960 FBDBKF_14690 36393 37031 -1 tmk dTMP kinase Morganella morganii S1
1 group_1960 EHELCC_15495 66469 67107 -1 tmk dTMP kinase Morganella morganii S2
2 group_1960 NLDBIP_16025 66469 67107 -1 tmk dTMP kinase Morganella morganii S4
3 group_1960 LHKJJB_15815 49579 50217 1 tmk dTMP kinase Morganella morganii S3
4 group_1960 HKOGLL_14935 48791 49429 1 tmk dTMP kinase Morganella morganii S5
5 group_1960 F4V73_RS07485 1565028 1565672 -1 tmk dTMP kinase Morganella psychrotolerans
6 group_1960 PMI_RS04250 955632 956276 1 tmk dTMP kinase Proteus mirabilis HI4320