COG0103


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0103, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Ribosomal protein S9
Function(s) descr. Translation, ribosomal structure and biogenesis (J)

Occurence in the database

COG0103 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_717 FBDBKF_03125 27793 28185 -1 rpsI 30S ribosomal protein S9 Morganella morganii S1
1 group_717 EHELCC_07410 218918 219310 1 rpsI 30S ribosomal protein S9 Morganella morganii S2
2 group_717 NLDBIP_07735 218791 219183 1 rpsI 30S ribosomal protein S9 Morganella morganii S4
3 group_717 LHKJJB_07270 182537 182929 1 rpsI 30S ribosomal protein S9 Morganella morganii S3
4 group_717 HKOGLL_03660 50458 50850 -1 rpsI 30S ribosomal protein S9 Morganella morganii S5
5 group_717 F4V73_RS11795 509074 509466 1 rpsI 30S ribosomal protein S9 Morganella psychrotolerans
6 group_717 PMI_RS18260 4005520 4005912 1 rpsI 30S ribosomal protein S9 Proteus mirabilis HI4320