COG0099


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0099, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Ribosomal protein S13
Function(s) descr. Translation, ribosomal structure and biogenesis (J)

Occurence in the database

COG0099 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2377 FBDBKF_19135 12254 12610 -1 rpsM 30S ribosomal protein S13 Morganella morganii S1
1 group_2377 EHELCC_18880 12254 12610 -1 rpsM 30S ribosomal protein S13 Morganella morganii S2
2 group_2377 NLDBIP_18895 12254 12610 -1 rpsM 30S ribosomal protein S13 Morganella morganii S4
3 group_2377 LHKJJB_18750 12254 12610 -1 rpsM 30S ribosomal protein S13 Morganella morganii S3
4 group_2377 HKOGLL_18485 12254 12610 -1 rpsM 30S ribosomal protein S13 Morganella morganii S5
5 group_2377 F4V73_RS19030 17727 18083 1 rpsM 30S ribosomal protein S13 Morganella psychrotolerans
6 group_2377 PMI_RS16255 3593207 3593563 1 rpsM 30S ribosomal protein S13 Proteus mirabilis HI4320