COG0094


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0094, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Ribosomal protein L5
Function(s) descr. Translation, ribosomal structure and biogenesis (J)

Occurence in the database

COG0094 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2387 FBDBKF_19185 17040 17579 -1 rplE 50S ribosomal protein L5 Morganella morganii S1
1 group_2387 EHELCC_18930 17040 17579 -1 rplE 50S ribosomal protein L5 Morganella morganii S2
2 group_2387 NLDBIP_18945 17040 17579 -1 rplE 50S ribosomal protein L5 Morganella morganii S4
3 group_2387 LHKJJB_18800 17040 17579 -1 rplE 50S ribosomal protein L5 Morganella morganii S3
4 group_2387 HKOGLL_18535 17040 17579 -1 rplE 50S ribosomal protein L5 Morganella morganii S5
5 group_2387 F4V73_RS18980 12758 13297 1 rplE 50S ribosomal protein L5 Morganella psychrotolerans
6 group_2387 PMI_RS16210 3588240 3588779 1 rplE 50S ribosomal protein L5 Proteus mirabilis HI4320