COG0072


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0072, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Phenylalanyl-tRNA synthetase beta subunit
Function(s) descr. Translation, ribosomal structure and biogenesis (J)

Occurence in the database

COG0072 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1806 FBDBKF_13400 57497 59884 -1 pheT phenylalanine--tRNA ligase subunit beta Morganella morganii S1
1 group_1806 EHELCC_08695 215307 217694 1 pheT phenylalanine--tRNA ligase subunit beta Morganella morganii S2
2 group_1806 NLDBIP_09020 215307 217694 1 pheT phenylalanine--tRNA ligase subunit beta Morganella morganii S4
3 group_1806 LHKJJB_05245 39465 41852 -1 pheT phenylalanine--tRNA ligase subunit beta Morganella morganii S3
4 group_1806 HKOGLL_05670 199898 202285 1 pheT phenylalanine--tRNA ligase subunit beta Morganella morganii S5
5 group_1806 F4V73_RS03360 715927 718314 1 pheT phenylalanine--tRNA ligase subunit beta Morganella psychrotolerans
6 group_1806 PMI_RS05050 1102762 1105149 1 pheT phenylalanine--tRNA ligase subunit beta Proteus mirabilis HI4320