COG0055


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0055, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description FoF1-type ATP synthase, beta subunit
Function(s) descr. Energy production and conversion (C)

Occurence in the database

COG0055 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2072 FBDBKF_15495 23872 25254 1 atpD F0F1 ATP synthase subunit beta Morganella morganii S1
1 group_2072 EHELCC_15855 23172 24554 1 atpD F0F1 ATP synthase subunit beta Morganella morganii S2
2 group_2072 NLDBIP_16515 56109 57491 -1 atpD F0F1 ATP synthase subunit beta Morganella morganii S4
3 group_2072 LHKJJB_16290 23172 24554 1 atpD F0F1 ATP synthase subunit beta Morganella morganii S3
4 group_2072 HKOGLL_16060 23172 24554 1 atpD F0F1 ATP synthase subunit beta Morganella morganii S5
5 group_2072 F4V73_RS17650 171887 173269 -1 atpD F0F1 ATP synthase subunit beta Morganella psychrotolerans
6 group_2072 PMI_RS15175 3366525 3367907 1 atpD F0F1 ATP synthase subunit beta Proteus mirabilis HI4320