COG0040


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0040, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description ATP phosphoribosyltransferase
Function(s) descr. Amino acid transport and metabolism (E)

Occurence in the database

COG0040 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1199 FBDBKF_06930 50805 51704 -1 hisG ATP phosphoribosyltransferase Morganella morganii S1
1 group_1199 EHELCC_04040 134482 135381 1 hisG ATP phosphoribosyltransferase Morganella morganii S2
2 group_1199 NLDBIP_04040 134278 135177 1 hisG ATP phosphoribosyltransferase Morganella morganii S4
3 group_1199 LHKJJB_09870 134392 135291 1 hisG ATP phosphoribosyltransferase Morganella morganii S3
4 group_1199 HKOGLL_09105 55761 56660 -1 hisG ATP phosphoribosyltransferase Morganella morganii S5
5 group_1199 F4V73_RS01115 235736 236635 -1 hisG ATP phosphoribosyltransferase Morganella psychrotolerans
6 group_1199 PMI_RS03275 723266 724165 -1 hisG ATP phosphoribosyltransferase Proteus mirabilis HI4320