COG0038


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0038, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 6 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description H+/Cl- antiporter ClcA
Function(s) descr. Inorganic ion transport and metabolism (P)

Occurence in the database

COG0038 is associated with 6 different proteins (see tab "Protein list" and "Profile")
The 6 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2657 FBDBKF_04585 115113 116513 1 clcA H(+)/Cl(-) exchange transporter ClcA Morganella morganii S1
1 group_2657 EHELCC_05875 174570 175970 1 clcA H(+)/Cl(-) exchange transporter ClcA Morganella morganii S2
2 group_2657 NLDBIP_06195 215635 217035 1 clcA H(+)/Cl(-) exchange transporter ClcA Morganella morganii S4
3 group_2657 LHKJJB_03075 193159 194559 1 clcA H(+)/Cl(-) exchange transporter ClcA Morganella morganii S3
4 group_2657 HKOGLL_06550 115023 116423 1 clcA H(+)/Cl(-) exchange transporter ClcA Morganella morganii S5
5 group_2657 PMI_RS10420 2289051 2290451 1 clcA H(+)/Cl(-) exchange transporter ClcA Proteus mirabilis HI4320