COG0008


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0008, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 19 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Glutamyl- or glutaminyl-tRNA synthetase
Function(s) descr. Translation, ribosomal structure and biogenesis (J)

Occurence in the database

COG0008 is associated with 19 different proteins (see tab "Protein list" and "Profile")
The 19 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_3274 FBDBKF_08015 135610 136524 -1 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS Morganella morganii S1
1 group_1534 FBDBKF_09910 76675 78342 -1 glnS glutamine--tRNA ligase Morganella morganii S1
2 group_1675 FBDBKF_11650 123559 124974 -1 gltX glutamate--tRNA ligase Morganella morganii S1
3 group_1534 EHELCC_04710 268640 270307 -1 glnS glutamine--tRNA ligase Morganella morganii S2
4 group_3274 EHELCC_13845 109804 110718 -1 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS Morganella morganii S2
5 group_1675 EHELCC_17570 21902 23317 -1 gltX glutamate--tRNA ligase Morganella morganii S2
6 group_1534 NLDBIP_04710 268436 270103 -1 glnS glutamine--tRNA ligase Morganella morganii S4
7 group_3274 NLDBIP_14290 130679 131593 -1 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS Morganella morganii S4
8 group_1675 NLDBIP_18780 22649 24064 -1 gltX glutamate--tRNA ligase Morganella morganii S4
9 group_3274 LHKJJB_08560 28156 29070 1 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS Morganella morganii S3
10 group_1534 LHKJJB_13920 65275 66942 1 glnS glutamine--tRNA ligase Morganella morganii S3
11 group_1675 LHKJJB_18010 21902 23317 -1 gltX glutamate--tRNA ligase Morganella morganii S3
12 group_3274 HKOGLL_08110 28156 29070 1 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS Morganella morganii S5
13 group_1534 HKOGLL_12615 77456 79123 -1 glnS glutamine--tRNA ligase Morganella morganii S5
14 group_1675 HKOGLL_18640 914 2329 1 gltX glutamate--tRNA ligase Morganella morganii S5
15 group_1534 F4V73_RS00440 94257 95924 1 glnS glutamine--tRNA ligase Morganella psychrotolerans
16 group_1675 F4V73_RS08030 1668614 1670029 1 gltX glutamate--tRNA ligase Morganella psychrotolerans
17 group_1534 PMI_RS02660 580915 582582 1 glnS glutamine--tRNA ligase Proteus mirabilis HI4320
18 group_1675 PMI_RS08960 1955083 1956501 1 gltX glutamate--tRNA ligase Proteus mirabilis HI4320