COG0004


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0004, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Ammonia channel protein AmtB
Function(s) descr. Inorganic ion transport and metabolism (P)

Occurence in the database

COG0004 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2122 FBDBKF_15940 39262 40551 1 amtB ammonium transporter AmtB Morganella morganii S1
1 group_2122 EHELCC_18540 26701 27990 1 amtB ammonium transporter AmtB Morganella morganii S2
2 group_2122 NLDBIP_17375 26701 27990 1 amtB ammonium transporter AmtB Morganella morganii S4
3 group_2122 LHKJJB_17285 28198 29487 -1 amtB ammonium transporter AmtB Morganella morganii S3
4 group_2122 HKOGLL_17110 26701 27990 1 amtB ammonium transporter AmtB Morganella morganii S5
5 group_2122 F4V73_RS16370 89949 91244 -1 amtB ammonium transporter AmtB Morganella psychrotolerans
6 group_2122 PMI_RS00615 157599 158897 1 amtB ammonium transporter AmtB Proteus mirabilis HI4320