Orthogroup:group_879


Homologs in group_879

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_04520 FBDBKF_04520 Morganella morganii S1 speA biosynthetic arginine decarboxylase
EHELCC_05810 EHELCC_05810 Morganella morganii S2 speA biosynthetic arginine decarboxylase
NLDBIP_06130 NLDBIP_06130 Morganella morganii S4 speA biosynthetic arginine decarboxylase
LHKJJB_03010 LHKJJB_03010 Morganella morganii S3 speA biosynthetic arginine decarboxylase
HKOGLL_06485 HKOGLL_06485 Morganella morganii S5 speA biosynthetic arginine decarboxylase
F4V73_RS08960 F4V73_RS08960 Morganella psychrotolerans speA biosynthetic arginine decarboxylase
PMI_RS10315 PMI_RS10315 Proteus mirabilis HI4320 speA biosynthetic arginine decarboxylase

Distribution of group_879 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_879 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_879

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_879.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 speA 7

Product

# Product Occurence
1 biosynthetic arginine decarboxylase 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1166 7 E Amino acid transport and metabolism (E) Arginine decarboxylase (spermidine biosynthesis)

Pfam domain Annotation(s)

Domain ID Occurences Description
PF02784 7 Pyridoxal-dependent decarboxylase, pyridoxal binding domain
PF17810 7 Arginine decarboxylase helical bundle domain
PF17944 7 Arginine decarboxylase C-terminal helical extension

Annotations of the 143 SwissProt hits

Annotation Number of occurrences
2-[(L-alanin-3-ylcarbamoyl)methyl]-2-hydroxybutanedioate decarboxylase 1
Arginine decarboxylase 6
Arginine decarboxylase (Fragment) 1
Arginine decarboxylase 1 1
Arginine decarboxylase 1, chloroplastic 1
Arginine decarboxylase 1A, chloroplastic 1
Arginine decarboxylase 1B, chloroplastic 1
Arginine decarboxylase 2 2
Biosynthetic arginine decarboxylase 90
Biosynthetic arginine decarboxylase 1 1
Biosynthetic arginine decarboxylase 2 1
Diaminopimelate decarboxylase 31
Diaminopimelate decarboxylase 1, chloroplastic 1
Diaminopimelate decarboxylase 2, chloroplastic 1
L-glutamyl-[BtrI acyl-carrier protein] decarboxylase 1
Lysine/ornithine decarboxylase 1
Ornithine decarboxylase 1
Probable diaminopimelate decarboxylase, chloroplastic 1

Protein length

Min length 634
Max length 635
Mean length (sd) 634.1 (0.4)
Median length 634.0

Protein length distribution