Orthogroup:group_56


Homologs in group_56

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14 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_16480 FBDBKF_16480 Morganella morganii S1 mdtC multidrug efflux RND transporter permease subunit MdtC
FBDBKF_16485 FBDBKF_16485 Morganella morganii S1 acrB MdtB/MuxB family multidrug efflux RND transporter permease subunit
EHELCC_08345 EHELCC_08345 Morganella morganii S2 mdtC multidrug efflux RND transporter permease subunit MdtC
EHELCC_08350 EHELCC_08350 Morganella morganii S2 acrB MdtB/MuxB family multidrug efflux RND transporter permease subunit
NLDBIP_08670 NLDBIP_08670 Morganella morganii S4 mdtC multidrug efflux RND transporter permease subunit MdtC
NLDBIP_08675 NLDBIP_08675 Morganella morganii S4 acrB MdtB/MuxB family multidrug efflux RND transporter permease subunit
LHKJJB_05590 LHKJJB_05590 Morganella morganii S3 acrB MdtB/MuxB family multidrug efflux RND transporter permease subunit
LHKJJB_05595 LHKJJB_05595 Morganella morganii S3 mdtC multidrug efflux RND transporter permease subunit MdtC
HKOGLL_05320 HKOGLL_05320 Morganella morganii S5 mdtC multidrug efflux RND transporter permease subunit MdtC
HKOGLL_05325 HKOGLL_05325 Morganella morganii S5 acrB MdtB/MuxB family multidrug efflux RND transporter permease subunit
F4V73_RS02995 F4V73_RS02995 Morganella psychrotolerans mdtC multidrug efflux RND transporter permease subunit MdtC
F4V73_RS03000 F4V73_RS03000 Morganella psychrotolerans - MdtB/MuxB family multidrug efflux RND transporter permease subunit
PMI_RS07735 PMI_RS07735 Proteus mirabilis HI4320 - MdtB/MuxB family multidrug efflux RND transporter permease subunit
PMI_RS07740 PMI_RS07740 Proteus mirabilis HI4320 mdtC multidrug efflux RND transporter permease subunit MdtC

Distribution of group_56 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_56 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_56

Orthogroup content: 14 members

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This page summarizes the annotation of all members of the orthologous group group_56.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 mdtC 7
2 acrB 5
3 - 2

Product

# Product Occurence
1 multidrug efflux RND transporter permease subunit MdtC 7
2 MdtB/MuxB family multidrug efflux RND transporter permease subunit 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0841 14 V Defense mechanisms (V) Multidrug efflux pump subunit AcrB

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K07788 7 multidrug efflux pump Two-component system -
K07789 7 multidrug efflux pump Two-component system -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00873 14 AcrB/AcrD/AcrF family

Annotations of the 152 SwissProt hits

Annotation Number of occurrences
Antibiotic efflux pump membrane transporter ArpB 1
Cation efflux system protein CusA 3
Cation efflux system protein CzcA 1
Cobalt-zinc-cadmium resistance protein CzcA 1
Efflux pump membrane transporter BepE 1
Efflux pump membrane transporter BepG 1
Multidrug efflux pump subunit AcrB 1
Multidrug export protein AcrF 1
Multidrug resistance protein MdtB 55
Multidrug resistance protein MdtC 66
Multidrug resistance protein MdtF 3
Multidrug resistance protein MexB 1
Multidrug/solvent efflux pump membrane transporter MepB 1
Nickel and cobalt resistance protein CnrA 1
Nickel-cobalt-cadmium resistance protein NccA 1
Nodulation protein NolG 1
Probable aminoglycoside efflux pump 1
Probable efflux pump membrane transporter SepB 1
Probable efflux pump membrane transporter TtgB 1
Protein HelA 1
Protein translocase subunit SecD 1
Putative cation efflux system protein SilA 1
Solvent-resistant pump membrane transporter SrpB 1
Swarming motility protein SwrC 1
Toluene efflux pump membrane transporter TtgB 1
Toluene efflux pump membrane transporter TtgE 1
Toluene efflux pump membrane transporter TtgH 1
Uncharacterized 17.3 kDa protein in cblS 5'region 1
Uncharacterized transporter HI_0895 1

Protein length

Min length 1027
Max length 1046
Mean length (sd) 1036.9 (8.0)
Median length 1033.5

Protein length distribution