Orthogroup:group_559


Homologs in group_559

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_01415 FBDBKF_01415 Morganella morganii S1 rnc ribonuclease III
EHELCC_00130 EHELCC_00130 Morganella morganii S2 rnc ribonuclease III
NLDBIP_03330 NLDBIP_03330 Morganella morganii S4 rnc ribonuclease III
LHKJJB_04845 LHKJJB_04845 Morganella morganii S3 rnc ribonuclease III
HKOGLL_02200 HKOGLL_02200 Morganella morganii S5 rnc ribonuclease III
F4V73_RS01980 F4V73_RS01980 Morganella psychrotolerans rnc ribonuclease III
PMI_RS09320 PMI_RS09320 Proteus mirabilis HI4320 rnc ribonuclease III

Distribution of group_559 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_559 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_559

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_559.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 rnc 7

Product

# Product Occurence
1 ribonuclease III 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0571 7 K Transcription (K) dsRNA-specific ribonuclease

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K03685 7 ribonuclease III [EC:3.1.26.3] Ribosome biogenesis in eukaryotes
Proteoglycans in cancer		 -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00035 7 Double-stranded RNA binding motif
PF14622 7 Ribonuclease-III-like

Annotations of the 504 SwissProt hits

Annotation Number of occurrences
Dicer-like protein 1 2
Double-strand-specific pac1 ribonuclease 1
Probable ribonuclease 3 1
Putative protein A464R 1
Ribonuclease 3 495
Ribonuclease 3 1 2
Ribonuclease 3 2 2

Protein length

Min length 203
Max length 226
Mean length (sd) 209.6 (11.2)
Median length 203.0

Protein length distribution