Orthogroup:group_553


Homologs in group_553

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_01350 FBDBKF_01350 Morganella morganii S1 tssA type VI secretion system protein TssA
EHELCC_00195 EHELCC_00195 Morganella morganii S2 tssA type VI secretion system protein TssA
NLDBIP_03265 NLDBIP_03265 Morganella morganii S4 tssA type VI secretion system protein TssA
LHKJJB_04780 LHKJJB_04780 Morganella morganii S3 tssA type VI secretion system protein TssA
HKOGLL_02265 HKOGLL_02265 Morganella morganii S5 tssA type VI secretion system protein TssA
F4V73_RS02320 F4V73_RS02320 Morganella psychrotolerans tssA type VI secretion system protein TssA
PMI_RS03625 PMI_RS03625 Proteus mirabilis HI4320 tssA type VI secretion system protein TssA

Distribution of group_553 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_553 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_553

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_553.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 tssA 7

Product

# Product Occurence
1 type VI secretion system protein TssA 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG3515 2 U Intracellular trafficking, secretion, and vesicular transport (U) Type VI protein secretion system component TssA1/VasJ/EvfE, contains ImpA_N domain

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K11910 7 type VI secretion system protein VasJ - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF06812 7 ImpA, N-terminal, type VI secretion system
PF16989 7 Type VI secretion, EvfE, EvfF, ImpA, BimE, VC_A0119, VasJ

Protein length

Min length 485
Max length 487
Mean length (sd) 485.4 (0.8)
Median length 485.0

Protein length distribution