Orthogroup:group_4298



Homologs in group_4298

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1 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
PMI_RS01135 PMI_RS01135 Proteus mirabilis HI4320 - Y4yA family PLP-dependent enzyme

Distribution of group_4298 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of the RefSeq best hits of group_4298

Orthogroup content: 1 members

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This page summarizes the annotation of all members of the orthologous group group_4298.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 - 1

Product

# Product Occurence
1 Y4yA family PLP-dependent enzyme 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0019 1 E Amino acid transport and metabolism (E) Diaminopimelate decarboxylase

Pfam domain Annotation(s)

Domain ID Occurences Description
PF02784 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain

Virulence factor Annotation(s)

VF gene ID Occurences Protein VF ID Category
VFG044285 1 Y4yA family PLP-dependent enzyme VF1252 Nutritional/Metabolic factor

Annotations of the 63 SwissProt hits

Annotation Number of occurrences
Arginine decarboxylase 4
Arginine decarboxylase (Fragment) 1
Arginine decarboxylase 1, chloroplastic 1
Arginine decarboxylase 1A, chloroplastic 1
Arginine decarboxylase 1B, chloroplastic 1
Arginine decarboxylase 2 1
Biosynthetic arginine decarboxylase 19
Diaminopimelate decarboxylase 21
Diaminopimelate decarboxylase 1, chloroplastic 1
Diaminopimelate decarboxylase 2, chloroplastic 1
Ornithine decarboxylase 9
Ornithine decarboxylase (Fragment) 1
Probable diaminopimelate decarboxylase, chloroplastic 1
Uncharacterized protein y4yA 1