Orthogroup:group_421


Homologs in group_421

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8 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_18970 FBDBKF_18970 Morganella morganii S1 nlpD murein hydrolase activator NlpD
EHELCC_18715 EHELCC_18715 Morganella morganii S2 nlpD murein hydrolase activator NlpD
NLDBIP_18590 NLDBIP_18590 Morganella morganii S4 nlpD murein hydrolase activator NlpD
LHKJJB_18585 LHKJJB_18585 Morganella morganii S3 nlpD murein hydrolase activator NlpD
HKOGLL_18320 HKOGLL_18320 Morganella morganii S5 nlpD murein hydrolase activator NlpD
F4V73_RS05050 F4V73_RS05050 Morganella psychrotolerans - peptidoglycan DD-metalloendopeptidase family protein
F4V73_RS13880 F4V73_RS13880 Morganella psychrotolerans nlpD murein hydrolase activator NlpD
PMI_RS11020 PMI_RS11020 Proteus mirabilis HI4320 nlpD murein hydrolase activator NlpD

Distribution of group_421 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_421 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_421

Orthogroup content: 8 members

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This page summarizes the annotation of all members of the orthologous group group_421.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 nlpD 7
2 - 1

Product

# Product Occurence
1 murein hydrolase activator NlpD 7
2 peptidoglycan DD-metalloendopeptidase family protein 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG4942 8 D Cell cycle control, cell division, chromosome partitioning (D) Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K06194 8 lipoprotein NlpD - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01476 7 LysM domain
PF01551 8 Peptidase family M23

Annotations of the 37 SwissProt hits

Annotation Number of occurrences
Cell division protein DipM 1
Glycyl-glycine endopeptidase ALE-1 1
Glycyl-glycine endopeptidase LytM 8
Lipoprotein NlpD (Fragment) 1
Lipoprotein NlpD/LppB homolog 1
Lysostaphin 2
Murein DD-endopeptidase MepM 3
Murein hydrolase activator EnvC 1
Murein hydrolase activator NlpD 5
Outer membrane antigenic lipoprotein B 1
Outer membrane antigenic lipoprotein B (Fragment) 1
Probable tape measure protein 1
Protein NlpD/LppB homolog 1
SPbeta prophage-derived uncharacterized transglycosylase YomI 1
Uncharacterized lipoprotein YgeR 1
Uncharacterized metalloprotease BUsg_310 1
Uncharacterized metalloprotease HI_0409 1
Uncharacterized metalloprotease bbp_296 1
Uncharacterized protein HI_0756 1
Uncharacterized protein MT3894 1
Uncharacterized protein Mb3815c 1
Uncharacterized protein NMB1333 1
Uncharacterized protein Rv3786c 1

Protein length

Min length 158
Max length 374
Mean length (sd) 345.8 (75.9)
Median length 373.0

Protein length distribution