Orthogroup:group_419


Homologs in group_419

Help

8 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_18920 FBDBKF_18920 Morganella morganii S1 araC AraC-type DNA-binding domain and AraC-containing proteins
FBDBKF_20455 FBDBKF_20455 Morganella morganii S1 tetD Transposon Tn10 TetD protein
EHELCC_18665 EHELCC_18665 Morganella morganii S2 araC AraC-type DNA-binding domain and AraC-containing proteins
NLDBIP_18640 NLDBIP_18640 Morganella morganii S4 araC AraC-type DNA-binding domain and AraC-containing proteins
LHKJJB_18535 LHKJJB_18535 Morganella morganii S3 araC AraC-type DNA-binding domain and AraC-containing proteins
HKOGLL_18270 HKOGLL_18270 Morganella morganii S5 araC AraC-type DNA-binding domain and AraC-containing proteins
F4V73_RS13825 F4V73_RS13825 Morganella psychrotolerans - helix-turn-helix domain-containing protein
PMI_RS19730 PMI_RS19730 Proteus mirabilis HI4320 - helix-turn-helix domain-containing protein

Distribution of group_419 homologs

Help

Number of homologs in each genome (first column and blue bar chart)

Download SVG

Phylogeny of group_419 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_419

Orthogroup content: 8 members

Help

This page summarizes the annotation of all members of the orthologous group group_419.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 araC 5
2 tetD 1
3 - 2

Product

# Product Occurence
1 AraC-type DNA-binding domain and AraC-containing proteins 5
2 Transposon Tn10 TetD protein 1
3 helix-turn-helix domain-containing protein 2

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG2207 8 K Transcription (K) AraC-type DNA-binding domain and AraC-containing proteins

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K19056 7 AraC family transcriptional regulator, transposon Tn10 TetD protein - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF06445 1 GyrI-like small molecule binding domain
PF12833 8 Helix-turn-helix domain
PF14526 6 Integron-associated effector binding protein

Annotations of the 163 SwissProt hits

Annotation Number of occurrences
Arabinose operon regulatory protein 5
Bifunctional transcriptional activator/DNA repair enzyme AdaA 1
F1 operon positive regulatory protein 1
HTH-type transcriptional activator AarP 1
HTH-type transcriptional activator Btr 1
HTH-type transcriptional activator RhaR 41
HTH-type transcriptional activator RhaS 48
HTH-type transcriptional regulator AlkR 1
HTH-type transcriptional regulator ArgR 1
HTH-type transcriptional regulator CdhR 1
HTH-type transcriptional regulator ExsA 1
HTH-type transcriptional regulator GbdR 2
HTH-type transcriptional regulator GlxA 1
HTH-type transcriptional regulator MtrA 1
Lactose operon transcription activator 1
Melibiose operon regulatory protein 2
Msm operon regulatory protein 1
Multiple antibiotic resistance protein MarA 6
Probable HTH-type transcriptional regulator STM3175 1
Probable transcription factor PqrA 1
Putative HTH-type transcriptional regulator YkgA 1
Regulatory protein PocR 1
Regulatory protein SoxS 4
Right origin-binding protein 3
Thermoregulatory protein LcrF 1
Transcriptional activator FeaR 1
Transcriptional activator RamA 2
Transcriptional regulator RamA 2
Transcriptional regulator Rob 1
Transposon Tn10 TetD protein 1
Uncharacterized HTH-type transcriptional regulator 1
Uncharacterized HTH-type transcriptional regulator HI_1052 1
Uncharacterized HTH-type transcriptional regulator MW0077 1
Uncharacterized HTH-type transcriptional regulator SA0097 1
Uncharacterized HTH-type transcriptional regulator SACOL0084 1
Uncharacterized HTH-type transcriptional regulator SAR0107 1
Uncharacterized HTH-type transcriptional regulator SAS0078 1
Uncharacterized HTH-type transcriptional regulator SAV0101 1
Uncharacterized HTH-type transcriptional regulator YbfI 1
Uncharacterized HTH-type transcriptional regulator YbfP 1
Uncharacterized HTH-type transcriptional regulator YdeC 1
Uncharacterized HTH-type transcriptional regulator YdeE 1
Uncharacterized HTH-type transcriptional regulator YfiF 1
Uncharacterized HTH-type transcriptional regulator YisR 1
Uncharacterized HTH-type transcriptional regulator YpdC 1
Uncharacterized HTH-type transcriptional regulator YqhC 1
Uncharacterized HTH-type transcriptional regulator YtdP 1
Uncharacterized HTH-type transcriptional regulator in cgkA 5'region (Fragment) 1
Virulence regulon transcriptional activator VirF 2
XylDLEGF operon transcriptional activator 1
XylDLEGF operon transcriptional activator 1 2
XylDLEGF operon transcriptional activator 2 1
XylDLEGF operon transcriptional activator 3 1
Xylose operon regulatory protein 3

Protein length

Min length 138
Max length 312
Mean length (sd) 289.2 (61.2)
Median length 312.0

Protein length distribution