Orthogroup:group_3906


Homologs in group_3906

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2 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
PMI_RS12165 PMI_RS12165 Proteus mirabilis HI4320 traC type IV secretion system protein TraC
PMI_RS18555 PMI_RS18555 Proteus mirabilis HI4320 - VirB3 family type IV secretion system protein

Distribution of group_3906 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of the RefSeq best hits of group_3906

Orthogroup content: 2 members

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This page summarizes the annotation of all members of the orthologous group group_3906.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 traC 1
2 - 1

Product

# Product Occurence
1 type IV secretion system protein TraC 1
2 VirB3 family type IV secretion system protein 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG3451 2 U Intracellular trafficking, secretion, and vesicular transport (U) Type IV secretory pathway, VirB4 component

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K03199 1 type IV secretion system protein VirB4 [EC:7.4.2.8] Bacterial secretion system -
K12063 1 conjugal transfer ATP-binding protein TraC - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF03135 1 CagE, TrbE, VirB family, component of type IV transporter system
PF05101 1 Type IV secretory pathway, VirB3-like protein
PF11130 1 TraC protein
PF19044 1 TraG P-loop domain
PF19357 1 Family of unknown function (DUF5934)

Annotations of the 17 SwissProt hits

Annotation Number of occurrences
Conjugal transfer protein TrbE 1
Probable conjugal transfer protein TrbE part 2 1
Protein TraC 1
Protein virB4 3
Type IV secretion system protein CagE 2
Type IV secretion system protein PtlC 1
Type IV secretion system protein PtlC homolog 2
Type IV secretion system protein virB4 6

Protein length

Min length 799
Max length 924
Mean length (sd) 861.5 (88.4)
Median length 861.5

Protein length distribution