Orthogroup:group_3701


Homologs in group_3701

Help

3 homologs were identified in 3 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_12535 FBDBKF_12535 Morganella morganii S1 rcnR Ni(II)/Co(II)-binding transcriptional repressor RcnR
F4V73_RS07765 F4V73_RS07765 Morganella psychrotolerans rcnR Ni(II)/Co(II)-binding transcriptional repressor RcnR
PMI_RS02225 PMI_RS02225 Proteus mirabilis HI4320 frmR formaldehyde-responsive transcriptional repressor FrmR

Distribution of group_3701 homologs

Help

Number of homologs in each genome (first column and blue bar chart)

Download SVG

Phylogeny of group_3701 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_3701

Orthogroup content: 3 members

Help

This page summarizes the annotation of all members of the orthologous group group_3701.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 rcnR 2
2 frmR 1

Product

# Product Occurence
1 Ni(II)/Co(II)-binding transcriptional repressor RcnR 2
2 formaldehyde-responsive transcriptional repressor FrmR 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1937 3 K Transcription (K) DNA-binding transcriptional regulator, FrmR family

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K23239 1 FrmR/RcnR family transcriptional regulator, repressor of frmRAB operon - -
K23240 2 FrmR/RcnR family transcriptional regulator, repressor of rcnA expression - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF02583 3 Metal-sensitive transcriptional repressor

Annotations of the 32 SwissProt hits

Annotation Number of occurrences
Copper-sensing transcriptional repressor CsoR 1
Transcriptional repressor FrmR 11
Transcriptional repressor RcnR 15
Transcriptional repressor RcnR homolog 4
Uncharacterized protein in bioA 5'region 1

Protein length

Min length 90
Max length 91
Mean length (sd) 90.3 (0.6)
Median length 90.0

Protein length distribution