Orthogroup:group_3697


Homologs in group_3697

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4 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
PMI_RS05435 PMI_RS05435 Proteus mirabilis HI4320 - RHS repeat-associated core domain-containing protein
PMI_RS05455 PMI_RS05455 Proteus mirabilis HI4320 - RHS repeat-associated core domain-containing protein
PMI_RS19260 PMI_RS19260 Proteus mirabilis HI4320 - RHS repeat-associated core domain-containing protein
PMI_RS19270 PMI_RS19270 Proteus mirabilis HI4320 - RHS repeat-associated core domain-containing protein

Distribution of group_3697 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_3697 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_3697

Orthogroup content: 4 members

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This page summarizes the annotation of all members of the orthologous group group_3697.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 - 4

Product

# Product Occurence
1 RHS repeat-associated core domain-containing protein 4

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG3209 4 R General function prediction only (R) Uncharacterized conserved protein RhaS, contains 28 RHS repeats

Pfam domain Annotation(s)

Domain ID Occurences Description
PF03527 4 RHS protein
PF05593 4 RHS Repeat
PF13665 1 Toxin PAAR-like domain
PF14436 1 Bacterial EndoU nuclease
PF20148 1 Domain of unknown function (DUF6531)

Annotations of the 19 SwissProt hits

Annotation Number of occurrences
Double-stranded DNA deaminase toxin A 1
Probable deoxyribonuclease RhsA 1
Probable deoxyribonuclease RhsB 1
Protein RhsA 1
Protein RhsB 1
Protein RhsC 1
Protein RhsD 1
Putative deoxyribonuclease RhsC 1
Putative protein RhsE 1
Putative uncharacterized protein YbfO 1
Putative uncharacterized protein YibJ 1
Putative uncharacterized protein YlbH 1
Teneurin-a 1
Toxin protein Tse5 1
Toxin subunit YenC1 1
Toxin subunit YenC2 1
tRNA nuclease WapA 1
tRNA(Glu)-specific nuclease WapA 1
tRNA3(Ser)-specific nuclease WapA 1

Protein length

Min length 380
Max length 1703
Mean length (sd) 770.5 (624.9)
Median length 499.5

Protein length distribution