Orthogroup:group_3669


Homologs in group_3669

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4 homologs were identified in 2 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_20470 FBDBKF_20470 Morganella morganii S1 - HTH tetR-type domain-containing protein
PMI_RS07070 PMI_RS07070 Proteus mirabilis HI4320 betI transcriptional regulator BetI
PMI_RS11865 PMI_RS11865 Proteus mirabilis HI4320 tetR(J) tetracycline resistance transcriptional repressor TetR(J)
PMI_RS15255 PMI_RS15255 Proteus mirabilis HI4320 - TetR/AcrR family transcriptional regulator C-terminal domain-containing protein

Distribution of group_3669 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_3669 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_3669

Orthogroup content: 4 members

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This page summarizes the annotation of all members of the orthologous group group_3669.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 - 2
2 betI 1
3 tetR(J) 1

Product

# Product Occurence
1 HTH tetR-type domain-containing protein 1
2 transcriptional regulator BetI 1
3 tetracycline resistance transcriptional repressor TetR(J) 1
4 TetR/AcrR family transcriptional regulator C-terminal domain-containing protein 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1309 3 K Transcription (K) DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
COG3226 1 K Transcription (K) DNA-binding transcriptional regulator YbjK

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K02167 1 TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes - -
K18476 3 TetR/AcrR family transcriptional regulator, tetracycline repressor protein - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00440 4 Bacterial regulatory proteins, tetR family
PF02909 3 Tetracyclin repressor-like, C-terminal domain
PF13977 1 BetI-type transcriptional repressor, C-terminal

Annotations of the 124 SwissProt hits

Annotation Number of occurrences
Biofilm operon icaADBC HTH-type negative transcriptional regulator IcaR 10
HTH-type transcriptional regulator BetI 80
HTH-type transcriptional regulator BetI 1 1
HTH-type transcriptional regulator BetI 2 1
HTH-type transcriptional regulator MtrR 1
HTH-type transcriptional regulator PksA 1
HTH-type transcriptional regulator UidR 4
HTH-type transcriptional repressor ComR 1
HTH-type transcriptional repressor KstR2 1
HTH-type transcriptional repressor MT1396 1
HTH-type transcriptional repressor Rv1353c 1
Nucleoid occlusion factor SlmA 6
Tetracycline repressor protein class A from transposon 1721 1
Tetracycline repressor protein class B from transposon Tn10 1
Tetracycline repressor protein class C 1
Tetracycline repressor protein class D 2
Tetracycline repressor protein class E 1
Tetracycline repressor protein class G 1
Tetracycline repressor protein class H 2
Transcriptional regulator RamR 1
Uncharacterized HTH-type transcriptional regulator Mb1388c 1
Uncharacterized HTH-type transcriptional regulator Rv0681 1
Uncharacterized HTH-type transcriptional regulator YobS 1
Uncharacterized HTH-type transcriptional regulator YvdT 1
Uncharacterized HTH-type transcriptional regulator YvkB 1
Uncharacterized HTH-type transcriptional regulator in dhlA 5'region 1

Protein length

Min length 105
Max length 212
Mean length (sd) 181.0 (50.9)
Median length 203.5

Protein length distribution