Orthogroup:group_3418


Homologs in group_3418

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_13725 FBDBKF_13725 Morganella morganii S1 lysR DNA-binding transcriptional regulator, LysR family
EHELCC_11395 EHELCC_11395 Morganella morganii S2 lysR DNA-binding transcriptional regulator, LysR family
NLDBIP_11740 NLDBIP_11740 Morganella morganii S4 lysR DNA-binding transcriptional regulator, LysR family
LHKJJB_11600 LHKJJB_11600 Morganella morganii S3 lysR DNA-binding transcriptional regulator, LysR family
HKOGLL_10210 HKOGLL_10210 Morganella morganii S5 lysR DNA-binding transcriptional regulator, LysR family

Distribution of group_3418 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_3418 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_3418

Orthogroup content: 5 members

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This page summarizes the annotation of all members of the orthologous group group_3418.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 lysR 5

Product

# Product Occurence
1 DNA-binding transcriptional regulator, LysR family 5

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0583 5 K Transcription (K) DNA-binding transcriptional regulator, LysR family

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00126 5 Bacterial regulatory helix-turn-helix protein, lysR family

Annotations of the 141 SwissProt hits

Annotation Number of occurrences
AhcY transcriptional activator HvrB 1
Carbapenem-hydrolyzing beta-lactamase transcriptional activator 1
Glycine cleavage system transcriptional activator 3
Glycine cleavage system transcriptional activator homolog 1
HTH-type transcriptional activator AllS 11
HTH-type transcriptional activator AmpR 1
HTH-type transcriptional activator CmpR 3
HTH-type transcriptional activator IlvY 2
HTH-type transcriptional regulator AbgR 1
HTH-type transcriptional regulator AlsR 1
HTH-type transcriptional regulator BudR 1
HTH-type transcriptional regulator CbbR 2
HTH-type transcriptional regulator CfxR 1
HTH-type transcriptional regulator ClcR 1
HTH-type transcriptional regulator CrgA 2
HTH-type transcriptional regulator CynR 2
HTH-type transcriptional regulator DsdC 1
HTH-type transcriptional regulator HdfR 47
HTH-type transcriptional regulator IlvR 1
HTH-type transcriptional regulator IlvY 1
HTH-type transcriptional regulator MetR 7
HTH-type transcriptional regulator PcaQ 2
HTH-type transcriptional regulator PerR 1
HTH-type transcriptional regulator PgrR 1
HTH-type transcriptional regulator ShiR 1
HTH-type transcriptional regulator TcbR 1
HTH-type transcriptional regulator TdfR 1
HTH-type transcriptional regulator TfdS 1
HTH-type transcriptional regulator TfdT 1
HTH-type transcriptional regulator TtuA 1
HTH-type transcriptional regulator XapR 1
HTH-type transcriptional regulator YtlI 1
Hca operon transcriptional activator HcaR 1
Octopine catabolism/uptake operon regulatory protein OccR 2
Probable RuBisCO transcriptional regulator 2
Probable cat1 operon transcriptional activator 1
Probable hydrogen peroxide-inducible genes activator 2
Putative transcriptional regulator 1
Regulatory protein NocR 2
RuBisCO operon transcriptional regulator 2
SDS degradation transcriptional activation protein 1
Transcriptional dual regulator GltC 1
Uncharacterized HTH-type transcriptional regulator HI_0775 1
Uncharacterized HTH-type transcriptional regulator YafC 1
Uncharacterized HTH-type transcriptional regulator YbdO 1
Uncharacterized HTH-type transcriptional regulator YbeF 1
Uncharacterized HTH-type transcriptional regulator YbhD 1
Uncharacterized HTH-type transcriptional regulator YcaN 1
Uncharacterized HTH-type transcriptional regulator YdcI 1
Uncharacterized HTH-type transcriptional regulator YdhB 2
Uncharacterized HTH-type transcriptional regulator YeiE 3
Uncharacterized HTH-type transcriptional regulator YfeR 2
Uncharacterized HTH-type transcriptional regulator YgfI 1
Uncharacterized HTH-type transcriptional regulator YhjC 1
Uncharacterized HTH-type transcriptional regulator YneJ 1
Uncharacterized HTH-type transcriptional regulator YnfL 1
Uncharacterized HTH-type transcriptional regulator YvbU 1
Uncharacterized HTH-type transcriptional regulator YxjO 1
Uncharacterized HTH-type transcriptional regulator YybE 1
Uncharacterized HTH-type transcriptional regulator in ibpB-leuC intergenic region 1
Uncharacterized HTH-type transcriptional regulator y4mQ 1

Protein length

Unique protein length 293

Protein length distribution