Orthogroup:group_318


Homologs in group_318

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8 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_09350 FBDBKF_09350 Morganella morganii S1 sctC type III secretion system outer membrane ring subunit SctC
EHELCC_10060 EHELCC_10060 Morganella morganii S2 sctC type III secretion system outer membrane ring subunit SctC
NLDBIP_10405 NLDBIP_10405 Morganella morganii S4 sctC type III secretion system outer membrane ring subunit SctC
LHKJJB_10950 LHKJJB_10950 Morganella morganii S3 sctC type III secretion system outer membrane ring subunit SctC
HKOGLL_14010 HKOGLL_14010 Morganella morganii S5 sctC type III secretion system outer membrane ring subunit SctC
F4V73_RS08365 F4V73_RS08365 Morganella psychrotolerans sctC type III secretion system outer membrane ring subunit SctC
F4V73_RS10615 F4V73_RS10615 Morganella psychrotolerans sctC type III secretion system outer membrane ring subunit SctC
PMI_RS13285 PMI_RS13285 Proteus mirabilis HI4320 sctC type III secretion system outer membrane ring subunit SctC

Distribution of group_318 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_318 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_318

Orthogroup content: 8 members

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This page summarizes the annotation of all members of the orthologous group group_318.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 sctC 8

Product

# Product Occurence
1 type III secretion system outer membrane ring subunit SctC 8

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1450 8 U Intracellular trafficking, secretion, and vesicular transport (U) Type II secretory pathway component GspD/PulD (secretin)

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K03219 1 type III secretion protein C Bacterial secretion system EHEC/EPEC pathogenicity signature, T3SS and effectors
K22504 7 type III secretion system outer membrane ring protein - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00263 8 Bacterial type II and III secretion system protein
PF03958 8 Bacterial type II/III secretion system short domain
PF21304 7 SPI-1 type 3 secretion system secretin, N0 domain

Annotations of the 39 SwissProt hits

Annotation Number of occurrences
Competence protein E 1
DNA utilization protein HofQ 1
Fimbrial assembly protein PilQ 1
Nodulation protein NolW 2
Probable type IV piliation system protein DR_0774 1
Putative assembly protein ORF430 1
Putative secretin GspD 1
SPI-1 type 3 secretion system secretin 1
SPI-2 type 3 secretion system secretin 1
Secretin ExeD 2
Secretin GspD 1
Secretin GspD 2 1
Secretin OutD 3
Secretin PulD 1
Secretin XcpQ 1
Secretin XpsD 1
Type 3 secretion system secretin 7
Type IV pilus biogenesis and competence protein PilQ 5
Uncharacterized protein y4xJ 1
Virion export protein 6

Protein length

Min length 513
Max length 571
Mean length (sd) 543.0 (16.2)
Median length 541.0

Protein length distribution