Orthogroup:group_317


Homologs in group_317

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8 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_09340 FBDBKF_09340 Morganella morganii S1 escV EscV/YscV/HrcV family type III secretion system export apparatus protein
EHELCC_10070 EHELCC_10070 Morganella morganii S2 escV EscV/YscV/HrcV family type III secretion system export apparatus protein
NLDBIP_10415 NLDBIP_10415 Morganella morganii S4 escV EscV/YscV/HrcV family type III secretion system export apparatus protein
LHKJJB_10940 LHKJJB_10940 Morganella morganii S3 escV EscV/YscV/HrcV family type III secretion system export apparatus protein
HKOGLL_14000 HKOGLL_14000 Morganella morganii S5 escV EscV/YscV/HrcV family type III secretion system export apparatus protein
F4V73_RS08300 F4V73_RS08300 Morganella psychrotolerans sctV type III secretion system export apparatus subunit SctV
F4V73_RS10625 F4V73_RS10625 Morganella psychrotolerans - EscV/YscV/HrcV family type III secretion system export apparatus protein
PMI_RS13275 PMI_RS13275 Proteus mirabilis HI4320 - EscV/YscV/HrcV family type III secretion system export apparatus protein

Distribution of group_317 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_317 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_317

Orthogroup content: 8 members

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This page summarizes the annotation of all members of the orthologous group group_317.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 escV 5
2 sctV 1
3 - 2

Product

# Product Occurence
1 EscV/YscV/HrcV family type III secretion system export apparatus protein 7
2 type III secretion system export apparatus subunit SctV 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG4789 8 U Intracellular trafficking, secretion, and vesicular transport (U) Type III secretory pathway, component EscV

Kegg Ortholog Annotation(s)

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00771 8 FHIPEP family

Virulence factor Annotation(s)

VF gene ID Occurences Protein VF ID Category
VFG041828 1 type III secretion system export apparatus subunit SctV VF1288 Effector delivery system

Annotations of the 33 SwissProt hits

Annotation Number of occurrences
Flagellar biosynthesis protein FlhA 15
Harpin secretion protein HrpI 1
Hypersensitivity response secretion protein HrcV 1
Hypersensitivity response secretion protein HrpI 1
Invasion protein InvA 2
Low calcium response locus protein D 4
Probable translocation protein y4yR 1
Protein MxiA 2
Protein hrpC2 1
Putative flagellar export/assembly protein LfhA 1
Putative truncated flagellar export/assembly protein LfhA 1
Secretion system apparatus protein SsaV 3

Protein length

Min length 686
Max length 719
Mean length (sd) 691.8 (11.9)
Median length 686.0

Protein length distribution