Orthogroup:group_315


Homologs in group_315

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8 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_09305 FBDBKF_09305 Morganella morganii S1 sctS type III secretion system export apparatus subunit SctS
EHELCC_10105 EHELCC_10105 Morganella morganii S2 sctS type III secretion system export apparatus subunit SctS
NLDBIP_10450 NLDBIP_10450 Morganella morganii S4 sctS type III secretion system export apparatus subunit SctS
LHKJJB_10905 LHKJJB_10905 Morganella morganii S3 sctS type III secretion system export apparatus subunit SctS
HKOGLL_13965 HKOGLL_13965 Morganella morganii S5 sctS type III secretion system export apparatus subunit SctS
F4V73_RS08340 F4V73_RS08340 Morganella psychrotolerans sctS type III secretion system export apparatus subunit SctS
F4V73_RS10660 F4V73_RS10660 Morganella psychrotolerans sctS type III secretion system export apparatus subunit SctS
PMI_RS13240 PMI_RS13240 Proteus mirabilis HI4320 sctS type III secretion system export apparatus subunit SctS

Distribution of group_315 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_315 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_315

Orthogroup content: 8 members

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This page summarizes the annotation of all members of the orthologous group group_315.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 sctS 8

Product

# Product Occurence
1 type III secretion system export apparatus subunit SctS 8

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG4794 8 U Intracellular trafficking, secretion, and vesicular transport (U) Type III secretory pathway, EscS/YscS component

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K03227 1 type III secretion protein S Bacterial secretion system EHEC/EPEC pathogenicity signature, T3SS and effectors
Xanthomonas spp. pathogenicity signature, T3SS and effectors
K22508 7 type III secretion system export apparatus protein - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01313 8 Bacterial export proteins, family 3

Virulence factor Annotation(s)

VF gene ID Occurences Protein VF ID Category
VFG002454 1 Type III secretion system protein BsaX VF0428 Effector delivery system

Annotations of the 25 SwissProt hits

Annotation Number of occurrences
Flagellar biosynthetic protein FliQ 12
Probable translocation protein y4yM 1
Secretion system apparatus protein SsaS 1
Surface presentation of antigens protein SpaQ 9
Yop proteins translocation protein S 2

Protein length

Min length 82
Max length 88
Mean length (sd) 86.8 (2.4)
Median length 88.0

Protein length distribution